media:new24
PyMOL v2.4 Release Notes
Exclusive Incentive PyMOL Features
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New
pi_interactions command finds Pi-Pi and Pi-Cation interactions (A > find > pi-interactions)
New WaterMap result presets (A > preset > WaterMap …)
APBS Plugin: Support multi-state assemblies without splitting states
APBS Plugin: Support for `–with-ph=6.0 –ph-calc-method=propka`
MAE import: Consider `pdb_literal_names` setting
Desmond virtual site handling improved (pseudo-atoms hidden by default, won’t affect polar contacts)
Trajactory Handling
CCP4/MRC Map Support
Distinguish .ccp4 and .mrc extensions (respect file format differences regarding origin)
Ignore N*START when loading MRC files with ORIGIN
.map extension: auto-detect the format
Uncategorized
New
distance mode 8 for distance to vdW ratio cutoff (for clashes)
MMTF export: Consider `pdb_retain_ids` setting
GLTF export (based on collada2gltf)
New “header” command in PWG language (e.g. “header add Access-Control-Allow-Origin *”)
New “internal_gui_name_color_mode” setting
MPEG4 Movie export: Apply `movie_fps` setting to exported file
Python API
Improved error handling with exceptions. Error messages are now captured in the exception instead of printed directly to standard out. E.g. a plugin could catch selection errors and handle them gracefully.
New: cmd.rebond()
New: cmd.get_capabilities()
cmd.fit() et al.: raise on error
Fix: cmd.get_bonds() state off by one
Change: cmd.slice_new(): if the provided name is the same as a previously existing name of an object which is not a slice, the command will now result in an error.
Launch Options
Graphics Drivers
Bug Fixes
Eliminate selector word length limit
Objects inside hidden groups flash in scene movie
Handle “missing” CA atoms when building amino acids (fuse command)
macOS: fix Zalman (byrow) stereo
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Fix secondary structure selection in builder wizard mode
Fix crash with pseudoatom state=0
Fix cmd.create(discrete=1) with multi-state input
Fix cmd.select_list() with state>0
Apply ignore_case more consistently
PyMOL v2.4.1 Maintenance Release (2020-09-14)
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Add mouse interactions
Add “Display > Looking Glass” toggle to hide the LG window
Set line_smooth=off for better performance
On Windows, handle display scaling >100%
Support changing background color (bg_color)
mmCIF connect_mode=4: Ignore conflicting “_chem_comp_atom.alt_atom_id”
Fix isomesh selection=all
Fix isosurface
ray_color_ramps regression (
#115)
Fix isosurface isolevel regression
PyMOL v2.4.2 Maintenance Release (2021-01-04 for macOS)
macOS: Fix linking in combination with conda-forge (
#154)
macOS DMG installer: Fix legacy plugin support (tk)
Fix ffmpeg installation
Fix mdelete on movie with no key frames (crash)
Fix excessive memory usage with 'set surface_type, 2'
media/new24.txt · Last modified: 2021/01/29 07:08 by holder