State Concept

A PyMOL State is somewhat analogous to a specific timepoint within a molecular dynamics trajectory, which is equivalent to a single conformer of a conformational ensemble. However, it is also analogous to a single result out of the many you might obtain from a molecular docking run.

When no frames have been defined in PyMOL, the program effective defaults to mapping each state to a single frame.

Many commands in PyMOL take a “state” argument, which takes on extra meaning if the value is zero or negative:

State values of -3 and below may imply additional special behaviors.

See Also

concepts