NOTE: This feature is experimental and unsupported.

“super” performs a residue-based pairwise alignment followed by a structural superposition, and then carries out zero or more cycles of refinement in order to reject outliers.

super mobile, target [, object=name ]

super protA////CA, protB////CA, object=supeAB 

By adjusting various parameters, the nature of the initial alignment can be modified to include or exclude various factors including sequence similarity, main chain path, secondary & tertiary structure, and current coordinates.

align | pair_fit | fit | rms | rms_cur | intra_rms | intra_rms_cur | cmd.super | commands